To convert TXT files, see Convert by renaming the file extension. The nowhitespace converter for TXT files is for developer testing only. Similarly, links in the table below take you to the next section where each format is described. Hovering over formats in the new dialog displays brief descriptions of the format. To convert and save in the same folder, click Convert on Server.įor the most current list of file converters, on the menu bar select Help> Format Converters.
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To convert and download the file, click Download. Select the destination format from this menu. Multiple converters for a file type are presented in a drop-down menu. This opens the Convert File Format dialog box. Right-clicking the file and selecting Convert.Ĭhecking a single file and selecting File menu >Convert. Manually convert file formats within GenomeSpace by:
The next section on this page lists available converters.
The option to manually convert the file will not be available if there is no converter for that format. Each tool handles these conversions differently, and may offer you options within the tool's user interface, or may convert the file behind the scenes. In sending files to different tools, you may automatically invoke a file conversion.
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Mac users needing help on creating plain text files, see this external site. Note rich text format TXT is noncomparable to plain text TXT. Transversion may be useful to take advantage of certain GenomeSpace features, such as Heatmap previews, which are only available to GCT, GXP and Genomica TAB files. A file with the extension but without the required attributes results in a tool error. A file must conform to the required attributes for a true conversion.For example, GenePattern's GCT format data are tab-delimited and GenePattern's CLS format labels are space-delimited. These required attributes may include specific usage for select cells such as specific headings, unique sample and probe identifiers, etc. Supported data types and required attributes are described in detail for file formats at their respective websites. You can transvert a plain text file to a tool-specific format by renaming the extension if the file is of a supported data type and has the required attributes of the format. The converse requires additional consideration. Right-click on the file and select Rename from the pop-up menu.Ĭheck to select the file and select File menu> Rename.Įdit the original file name and extension in the display and click Rename to save. A number of formats are based on the plain text format and you can convert these to a TXT file simply by renaming the file extension. Please let us know of additional file conversions that would be helpful to your work, or if you have a converter you would like to contribute to GenomeSpace, at the file extension. By no means do the given lists encompass all the accepted file formats used by the tools. GenomeSpace contains built-in file converters for frictionlessly moving your files from one tool to another and these are described in the three sections below.